PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10021488m
Common NameCICLE_v10021488mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family DBB
Protein Properties Length: 289aa    MW: 31127.8 Da    PI: 5.5649
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10021488mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box201.4e-06447542
         zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                      C+ +e  e++  C  ++  lC +C ++ H        H++vpl
  Ciclev10021488m  4 QCNVCEAAEAKVLCCADEAALCWECDDKVHAAnklaskHQRVPL 47
                     6******99*********************66899999999986 PP

2zf-B_box27.75.5e-095394237
         zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                     +++kC+ ++e    +fC +++ llC++C +++H        H
  Ciclev10021488m 53 QMPKCDICQETSGFFFCLQDRALLCRKCDVAIHTAnsyvsaH 94
                     799*******99*********************554555555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.594147IPR000315B-box-type zinc finger
CDDcd000218.44E-8347No hitNo description
SMARTSM003366.9E-10447IPR000315B-box-type zinc finger
PROSITE profilePS501198.9445299IPR000315B-box-type zinc finger
SMARTSM003368.2E-155299IPR000315B-box-type zinc finger
PfamPF006431.7E-65393IPR000315B-box-type zinc finger
CDDcd000216.66E-85599No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009641Biological Processshade avoidance
GO:0009658Biological Processchloroplast organization
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010099Biological Processregulation of photomorphogenesis
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0016607Cellular Componentnuclear speck
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MRIQCNVCEA AEAKVLCCAD EAALCWECDD KVHAANKLAS KHQRVPLSSS STQMPKCDIC  60
QETSGFFFCL QDRALLCRKC DVAIHTANSY VSAHQRFLLT GVKVGLEPAD PGASSSSIKS  120
LSGENILDMK SHSLSRRDAL MPVAAECKEV LPASSGGVGD FAMNKVSFAG GSAAGSTPSW  180
HMDDFLALPE LNQNYSFMDN GSSKADSGKR GDSDSSSILR SAEEELDDDE CLGQVPEASW  240
AVPQVPSPPT ASGLYWPKNP QNQYDSAFVP DIHHHSQLNR TATRRRLQ*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.77010.0fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1827001e-42AC182700.2 Populus trichocarpa clone Pop1-73H20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006442350.10.0hypothetical protein CICLE_v10021488mg
SwissprotQ9SYM22e-93BBX22_ARATH; B-box zinc finger protein 22
TrEMBLV4TUZ80.0V4TUZ8_9R
STRINGPOPTR_0011s10670.11e-140(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56062849
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.19e-88light-regulated zinc finger protein 1